TMB-Hunt amino acid composition based TransMembrane Barrel-Hunt

Screen sequence sets for potential/candidate transmembrane barrel proteins using whole sequence amino acid composition.

Submission

Sequences (fasta format) or submit a fasta file of sequences Include evolutionary information (gives more accurate results buts slows things down) Restrictions: Max query size equals 10,000 sequences if evolutionary information not used, or single sequences if evolutionary information is included.

  Scores explanation
  Example output

Publications: Garrow, A.G., Agnew, A. and Westhead, D.R. TMB-Hunt: a web server to screen sequence sets for transmembrane beta-barrel proteins. Nucleic Acids Res., 2005, 33: W188-92. Abstract Garrow, A.G., Agnew, A. and Westhead, D.R. TMB-Hunt: An amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins. BMC Bioinformatics, 2005, 6: 56. Abstract Home Leeds Bioinformatics Supplementary material Training/testing sequences Help Source code available on request

Contact D.R.Westhead at leeds.ac.uk